commit 562bef190eb2913610b8e5cb716d05c3ac1d3579
parent f5072f60d948a38368b521640cfcbfd28937b490
Author: NicholasFarrow <nicholas.w.farrow@gmail.com>
Date: Thu, 7 Feb 2019 00:45:40 +1100
README changes & code consistency
Diffstat:
4 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/mainCode/README.md b/mainCode/README.md
@@ -35,10 +35,12 @@ Sampling using a specific model (or model pairs) can be done through calling
Which runs hypothesis B for the 3rd model pair (single - uniform).
-## Running Jobs with Condor
+## Distributed Computing
As sampling can take very long periods of time (12 combinations of sub-hypotheses ranging between 2 and 7 parameters), it is required that sampling be done through a distributed computing system.
-The method of providing a number argument to the code allows for easy batch running of the script. `python3 hypothesisA.py [1-3]`.
+The method of providing a number argument to the code allows for easy batch running of the script.
+`python3 hypothesisA.py [1-3]`.
+`python3 hypothesisB.py [1-9]`.
## Basic analysis of output
`python3 hypothesisAnalyse.py A hypothesisA_out/`
diff --git a/mainCode/hypothesisA.py b/mainCode/hypothesisA.py
@@ -151,7 +151,7 @@ if not os.path.exists(directoryName):
os.makedirs(directoryName)
# Run pymultinest sampling
-pymultinest.run(likelihood, prior, ndim, n_live_points=100, sampling_efficiency=0.3, importance_nested_sampling=False, outputfiles_basename=directoryName + '/', resume=False, verbose=True)
+pymultinest.run(likelihood, prior, ndim, n_live_points=1000, sampling_efficiency=0.3, importance_nested_sampling=False, outputfiles_basename=directoryName + '/', resume=False, verbose=True)
print("Code took {} seconds to run.".format(datetime.now() - startTime))
print("Exiting!")
diff --git a/mainCode/hypothesisB.py b/mainCode/hypothesisB.py
@@ -187,7 +187,7 @@ if not os.path.exists(directoryName):
os.makedirs(directoryName)
# Run pymultinest sampling
-pymultinest.run(likelihood, prior, ndim, n_live_points=100, sampling_efficiency=0.3, importance_nested_sampling=False, outputfiles_basename=directoryName + '/', resume=False, verbose=True)
+pymultinest.run(likelihood, prior, ndim, n_live_points=1000, sampling_efficiency=0.3, importance_nested_sampling=False, outputfiles_basename=directoryName + '/', resume=False, verbose=True)
print("Code took {} seconds to run.".format(datetime.now() - startTime))
print("Exiting!")
diff --git a/models.pyc b/models.pyc
Binary files differ.
